Mouse SNP Summary
|
Symbol Name ID |
Col9a1
collagen, type IX, alpha 1 MGI:88465 |
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SNPs to Text File
| SNP ID (GRCm39) |
Map Position (GRCm39) |
Gene & Category | Variation Type |
Allele Summary (all strains) |
129P2/OlaHsd
|
129S1/SvImJ
|
129S5/SvEvBrd
|
129X1/SvJ
|
A/J
|
AKR/J
|
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
|
BALB/cByJ
|
BALB/cJ
|
BTBR T<+> Itpr3<tf>/J
|
BUB/BnJ
|
C3H/HeH
|
C3H/HeJ
|
C57BL/10J
|
C57BL/10SnJ
|
C57BL/6J
|
C57BL/6NJ
|
C57BR/cdJ
|
C57L/J
|
C58/J
|
CAST/EiJ
|
CBA/J
|
CE/J
|
CZECHII/EiJ
|
DBA/1J
|
DBA/2J
|
FVB/NJ
|
I/LnJ
|
JF1/MsJ
|
KK/HlJ
|
LEWES/EiJ
|
LG/J
|
LP/J
|
MA/MyJ
|
MOLF/EiJ
|
MSM/Ms
|
NOD/ShiLtJ
|
NON/ShiLtJ
|
NZB/BlNJ
|
NZO/HlLtJ
|
NZW/LacJ
|
PL/J
|
PWD/PhJ
|
PWK/PhJ
|
QSi3/Ianm
|
QSi5/Ianm
|
RF/J
|
RIIIS/J
|
SEA/GnJ
|
SJL/J
|
SM/J
|
SPRET/EiJ
|
ST/bJ
|
SWR/J
|
WSB/EiJ
|
ZALENDE/EiJ
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs36992924 MGI SNP Detail |
Chr1:24214702 | Col9a1 |
SNP | A/C | A | C | A | A | C | A | A | A | A | A | A | C | ||||||||||||||||||||||||||||||||||||||||||||
| rs37651529 MGI SNP Detail |
Chr1:24214732 | Col9a1 |
SNP | A/G | A | A | A | A | A | G | A | A | A | A | A | A | G | A | ||||||||||||||||||||||||||||||||||||||||||
| rs37099231 MGI SNP Detail |
Chr1:24214758 | Col9a1 |
SNP | A/G | G | G | G | G | G | A | G | G | G | G | G | G | A | G | ||||||||||||||||||||||||||||||||||||||||||
| rs36240921 MGI SNP Detail |
Chr1:24214822 | Col9a1 |
SNP | C/G | C | C | C | C | C | C | C | C | C | G | C | C | ||||||||||||||||||||||||||||||||||||||||||||
| rs36977448 MGI SNP Detail |
Chr1:24214825 | Col9a1 |
SNP | A/C | A | A | A | A | A | C | A | A | A | A | A | A | C | A | ||||||||||||||||||||||||||||||||||||||||||
| rs256973270 MGI SNP Detail |
Chr1:24214828 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs36486323 MGI SNP Detail |
Chr1:24214855 | Col9a1 |
SNP | A/T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | ||||||||||||||||||||||||||||||||||||||||||
| rs242908039 MGI SNP Detail |
Chr1:24214986 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | |||
| rs38192379 MGI SNP Detail |
Chr1:24215033 | Col9a1 |
SNP | A/G | A | A | G | A | A | G | A | A | A | G | A | A | G | A | ||||||||||||||||||||||||||||||||||||||||||
| rs233390737 MGI SNP Detail |
Chr1:24215040 | Col9a1 |
SNP | A/G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | |||
| rs245807097 MGI SNP Detail |
Chr1:24215087 | Col9a1 |
SNP | A/T | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A | |||
| rs265389528 MGI SNP Detail |
Chr1:24215255 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | |||
| rs37938981 MGI SNP Detail |
Chr1:24215314 | Col9a1 |
SNP | A/C | C | C | C | C | A | C | C | C | C | C | C | C | C | |||||||||||||||||||||||||||||||||||||||||||
| rs243502101 MGI SNP Detail |
Chr1:24215357 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | |||
| rs36373276 MGI SNP Detail |
Chr1:24215370 | Col9a1 |
SNP | C/T | C | C | C | T | C | C | C | T | C | T | C | |||||||||||||||||||||||||||||||||||||||||||||
| rs223314699 MGI SNP Detail |
Chr1:24215386 | Col9a1 |
SNP | C/G | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | G | C | C | C | C | |||
| rs259858109 MGI SNP Detail |
Chr1:24215389 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs217858667 MGI SNP Detail |
Chr1:24215392 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs39126009 MGI SNP Detail |
Chr1:24215399 | Col9a1 |
SNP | G/T | G | G | G | G | G | G | G | G | G | G | G | G | G | T | ||||||||||||||||||||||||||||||||||||||||||
| rs258659075 MGI SNP Detail |
Chr1:24215430 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs214355559 MGI SNP Detail |
Chr1:24215448 | Col9a1 |
SNP | A/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | |||
| rs231871273 MGI SNP Detail |
Chr1:24215486 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T | T | |||
| rs250539838 MGI SNP Detail |
Chr1:24215503 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs218190243 MGI SNP Detail |
Chr1:24215517 | Col9a1 |
SNP | A/C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | |||
| rs242943992 MGI SNP Detail |
Chr1:24215524 | Col9a1 |
SNP | A/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | A | T | T | T | T | T | A | T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | T | T | T | T | |||
| SNP ID (GRCm39) |
Map Position (GRCm39) |
Gene & Category | Variation Type |
Allele Summary (all strains) |
129P2/OlaHsd
|
129S1/SvImJ
|
129S5/SvEvBrd
|
129X1/SvJ
|
A/J
|
AKR/J
|
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
|
BALB/cByJ
|
BALB/cJ
|
BTBR T<+> Itpr3<tf>/J
|
BUB/BnJ
|
C3H/HeH
|
C3H/HeJ
|
C57BL/10J
|
C57BL/10SnJ
|
C57BL/6J
|
C57BL/6NJ
|
C57BR/cdJ
|
C57L/J
|
C58/J
|
CAST/EiJ
|
CBA/J
|
CE/J
|
CZECHII/EiJ
|
DBA/1J
|
DBA/2J
|
FVB/NJ
|
I/LnJ
|
JF1/MsJ
|
KK/HlJ
|
LEWES/EiJ
|
LG/J
|
LP/J
|
MA/MyJ
|
MOLF/EiJ
|
MSM/Ms
|
NOD/ShiLtJ
|
NON/ShiLtJ
|
NZB/BlNJ
|
NZO/HlLtJ
|
NZW/LacJ
|
PL/J
|
PWD/PhJ
|
PWK/PhJ
|
QSi3/Ianm
|
QSi5/Ianm
|
RF/J
|
RIIIS/J
|
SEA/GnJ
|
SJL/J
|
SM/J
|
SPRET/EiJ
|
ST/bJ
|
SWR/J
|
WSB/EiJ
|
ZALENDE/EiJ
|
| rs263824491 MGI SNP Detail |
Chr1:24215547 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | |||
| rs225284436 MGI SNP Detail |
Chr1:24215553 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | |||
| rs248257210 MGI SNP Detail |
Chr1:24215577 | Col9a1 |
SNP | A/T | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A | A | A | A | T | A | A | A | A | ||||
| rs262980260 MGI SNP Detail |
Chr1:24215720 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | |||
| rs582858612 MGI SNP Detail |
Chr1:24215728 | Col9a1 |
SNP | A/C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | |||
| rs37728550 MGI SNP Detail |
Chr1:24215756 | Col9a1 |
SNP | C/G | G | G | G | G | G | G | G | G | G | G | C | G | ||||||||||||||||||||||||||||||||||||||||||||
| rs39079606 MGI SNP Detail |
Chr1:24215772 | Col9a1 |
SNP | G/T | T | G | T | G | T | T | T | G | T | G | G | T | ||||||||||||||||||||||||||||||||||||||||||||
| rs254346352 MGI SNP Detail |
Chr1:24215780 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs223149740 MGI SNP Detail |
Chr1:24215862 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | T | C | C | C | T | |||
| rs254497571 MGI SNP Detail |
Chr1:24215879 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs217816098 MGI SNP Detail |
Chr1:24215917 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A | |||
| rs232287410 MGI SNP Detail |
Chr1:24215923 | Col9a1 |
SNP | A/T | T | T | T | T | T | T | A | A | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | A | T | T | T | A | |||
| rs37164502 MGI SNP Detail |
Chr1:24215952 | Col9a1 |
SNP | A/T | T | T | A | T | T | T | T | T | T | A | T | T | A | T | ||||||||||||||||||||||||||||||||||||||||||
| rs37602438 MGI SNP Detail |
Chr1:24215995 | Col9a1 |
SNP | G/T | G | G | G | G | G | T | G | G | G | G | G | G | G | G | ||||||||||||||||||||||||||||||||||||||||||
| rs36911417 MGI SNP Detail |
Chr1:24216018 | Col9a1 |
SNP | A/T | A | A | T | A | A | A | A | A | A | A | A | A | A | A | ||||||||||||||||||||||||||||||||||||||||||
| rs250364705 MGI SNP Detail |
Chr1:24216027 | Col9a1 |
SNP | G/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | T | T | |||
| rs212149627 MGI SNP Detail |
Chr1:24216071 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs243137663 MGI SNP Detail |
Chr1:24216125 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs260439713 MGI SNP Detail |
Chr1:24216144 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | |||
| rs225410686 MGI SNP Detail |
Chr1:24216179 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | A | A | G | G | G | G | G | G | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | G | G | A | |||
| rs36576095 MGI SNP Detail |
Chr1:24216180 | Col9a1 |
SNP | A/T | T | A | T | T | T | T | A | T | A | A | T | |||||||||||||||||||||||||||||||||||||||||||||
| rs586034405 MGI SNP Detail |
Chr1:24216181 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs250767645 MGI SNP Detail |
Chr1:24216182 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | T | |||
| rs219576470 MGI SNP Detail |
Chr1:24216189 | Col9a1 |
SNP | A/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | |||
| rs237089339 MGI SNP Detail |
Chr1:24216207 | Col9a1 |
SNP | A/C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | |||
| SNP ID (GRCm39) |
Map Position (GRCm39) |
Gene & Category | Variation Type |
Allele Summary (all strains) |
129P2/OlaHsd
|
129S1/SvImJ
|
129S5/SvEvBrd
|
129X1/SvJ
|
A/J
|
AKR/J
|
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
|
BALB/cByJ
|
BALB/cJ
|
BTBR T<+> Itpr3<tf>/J
|
BUB/BnJ
|
C3H/HeH
|
C3H/HeJ
|
C57BL/10J
|
C57BL/10SnJ
|
C57BL/6J
|
C57BL/6NJ
|
C57BR/cdJ
|
C57L/J
|
C58/J
|
CAST/EiJ
|
CBA/J
|
CE/J
|
CZECHII/EiJ
|
DBA/1J
|
DBA/2J
|
FVB/NJ
|
I/LnJ
|
JF1/MsJ
|
KK/HlJ
|
LEWES/EiJ
|
LG/J
|
LP/J
|
MA/MyJ
|
MOLF/EiJ
|
MSM/Ms
|
NOD/ShiLtJ
|
NON/ShiLtJ
|
NZB/BlNJ
|
NZO/HlLtJ
|
NZW/LacJ
|
PL/J
|
PWD/PhJ
|
PWK/PhJ
|
QSi3/Ianm
|
QSi5/Ianm
|
RF/J
|
RIIIS/J
|
SEA/GnJ
|
SJL/J
|
SM/J
|
SPRET/EiJ
|
ST/bJ
|
SWR/J
|
WSB/EiJ
|
ZALENDE/EiJ
|
| rs254203705 MGI SNP Detail |
Chr1:24216217 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs217724493 MGI SNP Detail |
Chr1:24216232 | Col9a1 |
SNP | A/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | |||
| rs36868199 MGI SNP Detail |
Chr1:24216238 | Col9a1 |
SNP | C/T | C | T | C | C | C | C | C | T | C | C | T | C | ||||||||||||||||||||||||||||||||||||||||||||
| rs263920082 MGI SNP Detail |
Chr1:24216270 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | T | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | T | |||
| rs232834954 MGI SNP Detail |
Chr1:24216283 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | |||
| rs252022227 MGI SNP Detail |
Chr1:24216287 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs258225810 MGI SNP Detail |
Chr1:24216333 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs225587544 MGI SNP Detail |
Chr1:24216393 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | G | G | A | |||
| rs244298820 MGI SNP Detail |
Chr1:24216405 | Col9a1 |
SNP | A/G | A | A | A | A | A | A | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A | A | A | G | A | A | A | A | A | A | G | |||
| rs212035889 MGI SNP Detail |
Chr1:24216430 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | T | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | T | |||
| rs240429106 MGI SNP Detail |
Chr1:24216431 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | T | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | T | |||
| rs37180661 MGI SNP Detail |
Chr1:24216468 | Col9a1 |
SNP | A/G | A | A | G | A | A | G | A | A | A | G | A | G | A | |||||||||||||||||||||||||||||||||||||||||||
| rs36257051 MGI SNP Detail |
Chr1:24216502 | Col9a1 |
SNP | A/G | A | A | G | A | A | A | A | A | A | G | A | G | A | |||||||||||||||||||||||||||||||||||||||||||
| rs240211861 MGI SNP Detail |
Chr1:24216563 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | C | C | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | C | T | T | C | T | T | T | C | |||
| rs579497777 MGI SNP Detail |
Chr1:24216588 | Col9a1 |
SNP | A/T | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A | |||
| rs583180419 MGI SNP Detail |
Chr1:24216589 | Col9a1 |
SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | ||||
| rs250611970 MGI SNP Detail |
Chr1:24216771 | Col9a1 Tssr6103 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs219607712 MGI SNP Detail |
Chr1:24216772 | Col9a1 Tssr6103 |
SNP | A/G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | |||
| rs37327971 MGI SNP Detail |
Chr1:24216788 | Col9a1 Tssr6103 |
SNP | C/T | C | C | T | C | C | T | C | C | C | T | C | C | T | C | ||||||||||||||||||||||||||||||||||||||||||
| rs248559402 MGI SNP Detail |
Chr1:24216836 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | |||
| rs227592855 MGI SNP Detail |
Chr1:24216861 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | |||
| rs585647274 MGI SNP Detail |
Chr1:24216885 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | |||||||||||
| rs580078634 MGI SNP Detail |
Chr1:24216888 | Col9a1 |
SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | ||||||||||||
| rs247905624 MGI SNP Detail |
Chr1:24216894 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | C | T | T | C | T | T | T | C | |||
| rs265841584 MGI SNP Detail |
Chr1:24216897 | Col9a1 |
SNP | A/C | A | A | A | A | A | A | C | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | C | A | A | A | A | A | C | A | A | A | A | A | A | C | A | A | A | A | C | A | A | C | A | A | A | C | |||
| SNP ID (GRCm39) |
Map Position (GRCm39) |
Gene & Category | Variation Type |
Allele Summary (all strains) |
129P2/OlaHsd
|
129S1/SvImJ
|
129S5/SvEvBrd
|
129X1/SvJ
|
A/J
|
AKR/J
|
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
|
BALB/cByJ
|
BALB/cJ
|
BTBR T<+> Itpr3<tf>/J
|
BUB/BnJ
|
C3H/HeH
|
C3H/HeJ
|
C57BL/10J
|
C57BL/10SnJ
|
C57BL/6J
|
C57BL/6NJ
|
C57BR/cdJ
|
C57L/J
|
C58/J
|
CAST/EiJ
|
CBA/J
|
CE/J
|
CZECHII/EiJ
|
DBA/1J
|
DBA/2J
|
FVB/NJ
|
I/LnJ
|
JF1/MsJ
|
KK/HlJ
|
LEWES/EiJ
|
LG/J
|
LP/J
|
MA/MyJ
|
MOLF/EiJ
|
MSM/Ms
|
NOD/ShiLtJ
|
NON/ShiLtJ
|
NZB/BlNJ
|
NZO/HlLtJ
|
NZW/LacJ
|
PL/J
|
PWD/PhJ
|
PWK/PhJ
|
QSi3/Ianm
|
QSi5/Ianm
|
RF/J
|
RIIIS/J
|
SEA/GnJ
|
SJL/J
|
SM/J
|
SPRET/EiJ
|
ST/bJ
|
SWR/J
|
WSB/EiJ
|
ZALENDE/EiJ
|
| rs224620827 MGI SNP Detail |
Chr1:24216915 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs247534125 MGI SNP Detail |
Chr1:24216956 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | |||
| rs258117143 MGI SNP Detail |
Chr1:24216975 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | T | |||
| rs225677751 MGI SNP Detail |
Chr1:24216999 | Col9a1 |
SNP | C/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G | |||
| rs244145456 MGI SNP Detail |
Chr1:24217061 | Col9a1 |
SNP | C/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs256030976 MGI SNP Detail |
Chr1:24217066 | Col9a1 |
SNP | G/T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs37086408 MGI SNP Detail |
Chr1:24217088 | Col9a1 |
SNP | A/G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | ||||||||||||||||||||||||||||||||||||||||||
| rs37858238 MGI SNP Detail |
Chr1:24217149 | Col9a1 |
SNP | G/T | T | T | G | T | T | T | T | T | T | G | T | T | G | T | ||||||||||||||||||||||||||||||||||||||||||
| rs38233318 MGI SNP Detail |
Chr1:24217164 | Col9a1 |
SNP | C/G | C | C | G | C | C | C | C | C | C | G | C | C | G | C | ||||||||||||||||||||||||||||||||||||||||||
| rs237912946 MGI SNP Detail |
Chr1:24217172 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | |||
| rs244756812 MGI SNP Detail |
Chr1:24217196 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | |||
| rs38967018 MGI SNP Detail |
Chr1:24217208 | Col9a1 |
SNP | A/C | A | A | A | A | A | C | A | A | A | A | A | A | A | A | ||||||||||||||||||||||||||||||||||||||||||
| rs230987288 MGI SNP Detail |
Chr1:24217250 | Col9a1 |
SNP | C/T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | |||
| rs248445882 MGI SNP Detail |
Chr1:24217251 | Col9a1 |
SNP | G/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | T | T | |||
| rs38240025 MGI SNP Detail |
Chr1:24217315 | Col9a1 |
SNP | A/G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | ||||||||||||||||||||||||||||||||||||||||||
| rs242549515 MGI SNP Detail |
Chr1:24217347 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | |||
| rs259789409 MGI SNP Detail |
Chr1:24217372 | Col9a1 |
SNP | G/T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G | |||
| rs38634817 MGI SNP Detail |
Chr1:24217391 | Col9a1 |
SNP | C/T | C | C | C | C | C | T | C | C | C | C | C | C | C | C | ||||||||||||||||||||||||||||||||||||||||||
| rs36434195 MGI SNP Detail |
Chr1:24217409 | Col9a1 |
SNP | C/T | T | T | C | T | T | C | T | T | T | C | T | T | C | T | ||||||||||||||||||||||||||||||||||||||||||
| rs251830378 MGI SNP Detail |
Chr1:24217424 | Col9a1 |
SNP | C/T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | |||
| rs219350311 MGI SNP Detail |
Chr1:24217434 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | G | G | G | |||
| rs36708668 MGI SNP Detail |
Chr1:24217466 | Col9a1 |
SNP | C/T | C | C | T | C | C | C | C | C | C | C | C | C | C | |||||||||||||||||||||||||||||||||||||||||||
| rs264614206 MGI SNP Detail |
Chr1:24217467 | Col9a1 |
SNP | A/G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | |||
| rs233707059 MGI SNP Detail |
Chr1:24217529 | Col9a1 |
SNP | G/T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G | G | G | |||
| rs6165356 MGI SNP Detail |
Chr1:24217549 | Col9a1 |
SNP | C/T | C | C | T | C | C | C | T | T | C | C | C | T | C | C | C |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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