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Mouse SNP Summary
Symbol
Name
ID 		Sox2
SRY (sex determining region Y)-box 2
MGI:98364

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231659662
MGI SNP Detail		 Chr3:34702580 Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1974 bp upstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G A G G G G A G A G G G G G A G G G G G G G G G G G G G A G G G G
rs252057899
MGI SNP Detail		 Chr3:34702585 Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1969 bp upstream
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A A A G A A A A A A G A A A A A A A A A A A A A A A A A A
rs219886991
MGI SNP Detail		 Chr3:34702589 Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1965 bp upstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236893671
MGI SNP Detail		 Chr3:34702710 Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1844 bp upstream
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs260034437
MGI SNP Detail		 Chr3:34702911 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1643 bp upstream
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226829000
MGI SNP Detail		 Chr3:34703039 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1515 bp upstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239014663
MGI SNP Detail		 Chr3:34703055 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1499 bp upstream
Sox2ot within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs257504486
MGI SNP Detail		 Chr3:34703059 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1495 bp upstream
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs221637750
MGI SNP Detail		 Chr3:34703131 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1423 bp upstream
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237943127
MGI SNP Detail		 Chr3:34703145 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1409 bp upstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs256799094
MGI SNP Detail		 Chr3:34703182 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1372 bp upstream
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227731022
MGI SNP Detail		 Chr3:34703275 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1279 bp upstream
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs254238307
MGI SNP Detail		 Chr3:34703398 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1156 bp upstream
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs264065352
MGI SNP Detail		 Chr3:34703537 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 1017 bp upstream
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235110731
MGI SNP Detail		 Chr3:34703584 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 970 bp upstream
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs387776714
MGI SNP Detail		 Chr3:34703587 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 967 bp upstream
Sox2ot within coordinates of
 SNP G/T T T T T T T T T T G T T T T T T T T T T T T T T T G T G T T T T T G T T T T T T T T T T T T T T T T T T T
rs246692301
MGI SNP Detail		 Chr3:34703600 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 954 bp upstream
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G T G G G G G G G G G T G G T G G T G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs31433731
MGI SNP Detail		 Chr3:34703737 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 817 bp upstream
Sox2ot within coordinates of
 SNP A/G G A
rs231610727
MGI SNP Detail		 Chr3:34703856 Cpgi13072 within coordinates of
Gm64662 within coordinates of
Rr370604 within coordinates of
Rr575166 within coordinates of
Sox2 698 bp upstream
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245701914
MGI SNP Detail		 Chr3:34704074 Cpgi13072 within coordinates of
Rr370604 within coordinates of
Rr575168 within coordinates of
Sox2 480 bp upstream
Sox2ot within coordinates of
Tssr28821 within coordinates of
 SNP C/G G G G G G G G G G C G G G G G G G G G C G G C G G C G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs212270579
MGI SNP Detail
Alliance Variant		 Chr3:34704408 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Gm64674 within coordinates of
Rr575168 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C A C C C C C C C C C C C A C C A C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs235433893
MGI SNP Detail
Alliance Variant		 Chr3:34704504 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Rr575168 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/G A G A A A A A G A A A G G G G A G G A A A A A A A G A A A A G G G G G
rs263601349
MGI SNP Detail
Alliance Variant		 Chr3:34704516 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Rr575168 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP C/G G C G G G G G G C G G G G C C G G G G G G G G G G G G G G G G G G G C G C C
rs232634811
MGI SNP Detail
Alliance Variant		 Chr3:34704825 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 Coding-Synonymous
Sox2ot within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs251784901
MGI SNP Detail
Alliance Variant		 Chr3:34705155 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 Coding-Synonymous
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A G A G A A A A A G A A A A A A G A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221617304
MGI SNP Detail
Alliance Variant		 Chr3:34705167 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 Coding-Synonymous
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237906916
MGI SNP Detail
Alliance Variant		 Chr3:34705529 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262915128
MGI SNP Detail
Alliance Variant		 Chr3:34705607 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G A G G A G G A G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs579833798
MGI SNP Detail
Alliance Variant		 Chr3:34705656 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220504043
MGI SNP Detail
Alliance Variant		 Chr3:34705667 Cpgi13072 within coordinates of
Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/G A A A A A A A A G A A A A A A A A A A A A G A A G A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs242633598
MGI SNP Detail
Alliance Variant		 Chr3:34705807 Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265936318
MGI SNP Detail
Alliance Variant		 Chr3:34705858 Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs233965804
MGI SNP Detail
Alliance Variant		 Chr3:34705885 Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246651986
MGI SNP Detail
Alliance Variant		 Chr3:34706316 Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260134894
MGI SNP Detail
Alliance Variant		 Chr3:34706322 Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T C T C T T T T C T T T T T T C T T T T T T T C T T T T
rs225633866
MGI SNP Detail
Alliance Variant		 Chr3:34706348 Gm64654 within coordinates of
Sox2 mRNA-UTR
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs245570062
MGI SNP Detail		 Chr3:34706817 Rr575169 within coordinates of
Sox2 207 bp downstream
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs211941541
MGI SNP Detail		 Chr3:34706877 Rr575169 within coordinates of
Sox2 267 bp downstream
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs237206428
MGI SNP Detail		 Chr3:34706921 Rr575169 within coordinates of
Sox2 311 bp downstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253919414
MGI SNP Detail		 Chr3:34707229 Rr575170 within coordinates of
Sox2 619 bp downstream
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs582155306
MGI SNP Detail		 Chr3:34707279 Rr575170 within coordinates of
Sox2 669 bp downstream
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585475877
MGI SNP Detail		 Chr3:34707286 Rr575170 within coordinates of
Sox2 676 bp downstream
Sox2ot within coordinates of
 SNP A A A A A A A A A A A A
rs218670902
MGI SNP Detail
Alliance Variant		 Chr3:34707425 Gm54566 Noncoding-Transcript-Variant
Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 815 bp downstream
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A G A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs232601974
MGI SNP Detail		 Chr3:34707542 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 932 bp downstream
Sox2ot within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs251752671
MGI SNP Detail		 Chr3:34707664 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1054 bp downstream
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs48563006
MGI SNP Detail		 Chr3:34707796 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1186 bp downstream
Sox2ot within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs231943413
MGI SNP Detail		 Chr3:34707925 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1315 bp downstream
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262586330
MGI SNP Detail		 Chr3:34707926 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1316 bp downstream
Sox2ot within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs220807367
MGI SNP Detail		 Chr3:34708316 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1706 bp downstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs245443450
MGI SNP Detail		 Chr3:34708454 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1844 bp downstream
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51011713
MGI SNP Detail		 Chr3:34708455 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1845 bp downstream
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C C C C C A C
rs579992642
MGI SNP Detail		 Chr3:34708539 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1929 bp downstream
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583599920
MGI SNP Detail		 Chr3:34708556 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1946 bp downstream
Sox2ot within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260580818
MGI SNP Detail		 Chr3:34708582 Rr366704 within coordinates of
Rr575170 within coordinates of
Sox2 1972 bp downstream
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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