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Mouse SNP Summary
Symbol
Name
ID 		Sox4
SRY (sex determining region Y)-box 4
MGI:98366

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Showing SNP(s) 1 - 100 of 115

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257365751
MGI SNP Detail		 Chr13:29131034 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1868 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262751481
MGI SNP Detail		 Chr13:29131035 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1867 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225270367
MGI SNP Detail		 Chr13:29131087 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1815 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C C T T T C T T T T T T C T T T T C T T C T T C T
rs242920220
MGI SNP Detail		 Chr13:29131111 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1791 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs211931863
MGI SNP Detail		 Chr13:29131115 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1787 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235097878
MGI SNP Detail		 Chr13:29131125 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1777 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253705961
MGI SNP Detail		 Chr13:29131205 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1697 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216919542
MGI SNP Detail		 Chr13:29131219 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1683 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237512232
MGI SNP Detail		 Chr13:29131236 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1666 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262267924
MGI SNP Detail		 Chr13:29131239 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1663 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220595822
MGI SNP Detail		 Chr13:29131240 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1662 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232244990
MGI SNP Detail		 Chr13:29131266 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1636 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs250866968
MGI SNP Detail		 Chr13:29131274 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1628 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T
rs218380842
MGI SNP Detail		 Chr13:29131303 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1599 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A C A A A A A A A A A A A A A A C A A A A
rs251784015
MGI SNP Detail		 Chr13:29131331 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1571 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264093698
MGI SNP Detail		 Chr13:29131346 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1556 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T T G T T T T T T G T T T T G T T G T T T T
rs225436886
MGI SNP Detail		 Chr13:29131347 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1555 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245282295
MGI SNP Detail		 Chr13:29131348 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1554 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G T G G A G
rs256408698
MGI SNP Detail		 Chr13:29131371 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1531 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G G G G G G G G A G G G G A G G G G G G G
rs225429191
MGI SNP Detail		 Chr13:29131478 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1424 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs243027746
MGI SNP Detail		 Chr13:29131560 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1342 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253905531
MGI SNP Detail		 Chr13:29131608 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1294 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229089572
MGI SNP Detail		 Chr13:29131639 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1263 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs259132946
MGI SNP Detail		 Chr13:29131654 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1248 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216356730
MGI SNP Detail		 Chr13:29131709 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1193 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G G A A A G A A A A A A G A A A A G A A G A A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239700307
MGI SNP Detail		 Chr13:29131712 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1190 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251330079
MGI SNP Detail		 Chr13:29131771 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1131 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213332060
MGI SNP Detail		 Chr13:29131772 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1130 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230329027
MGI SNP Detail		 Chr13:29131811 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 1091 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250819163
MGI SNP Detail		 Chr13:29131921 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 981 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs212464034
MGI SNP Detail		 Chr13:29131965 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 937 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs583507752
MGI SNP Detail		 Chr13:29132059 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 843 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs240571454
MGI SNP Detail		 Chr13:29132233 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 669 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263924498
MGI SNP Detail		 Chr13:29132238 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 664 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225106879
MGI SNP Detail		 Chr13:29132249 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 653 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G G G G G G G G A G G G G A G G G G G G G
rs248000962
MGI SNP Detail		 Chr13:29132287 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 615 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250693291
MGI SNP Detail		 Chr13:29132413 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 489 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs219424842
MGI SNP Detail		 Chr13:29132479 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 423 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T T C C C C C C C C C C C T C C C C T C C C C C C C
rs236783812
MGI SNP Detail		 Chr13:29132581 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 321 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A A T T T T A T T T T T T A T T T T A T T A T T T T
rs253851924
MGI SNP Detail		 Chr13:29132628 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 274 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234962981
MGI SNP Detail		 Chr13:29132667 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 235 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247230099
MGI SNP Detail		 Chr13:29132716 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 186 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265678465
MGI SNP Detail		 Chr13:29132736 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 166 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs231577335
MGI SNP Detail		 Chr13:29132809 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 93 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255971720
MGI SNP Detail		 Chr13:29132818 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 84 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213472170
MGI SNP Detail		 Chr13:29132840 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 62 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586808435
MGI SNP Detail
Alliance Variant		 Chr13:29133061 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs224633637
MGI SNP Detail
Alliance Variant		 Chr13:29133148 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
Tssr121900 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs243234767
MGI SNP Detail
Alliance Variant		 Chr13:29133641 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Rr476394 within coordinates of
Sox4 mRNA-UTR
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T A T T T T A T T A T T A T
rs212398722
MGI SNP Detail
Alliance Variant		 Chr13:29133642 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Rr476394 within coordinates of
Sox4 mRNA-UTR
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243513804
MGI SNP Detail
Alliance Variant		 Chr13:29133697 Gm46405 within coordinates of
Gm46406 within coordinates of
Gm61652 within coordinates of
Rr476394 within coordinates of
Sox4 mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G G A A A G A A A A A A G A A A A G A A G A A G A
rs260588612
MGI SNP Detail
Alliance Variant		 Chr13:29134095 Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476394 within coordinates of
Sox4 mRNA-UTR
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs217486701
MGI SNP Detail
Alliance Variant		 Chr13:29135154 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C C G G G G G G G G G G C G G G G C G G G G G G G
rs238187948
MGI SNP Detail
Alliance Variant		 Chr13:29135188 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs250613663
MGI SNP Detail
Alliance Variant		 Chr13:29135249 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219534838
MGI SNP Detail
Alliance Variant		 Chr13:29135375 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236722177
MGI SNP Detail
Alliance Variant		 Chr13:29135456 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
Tssr119058 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs248238221
MGI SNP Detail
Alliance Variant		 Chr13:29135464 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 mRNA-UTR
 SNP G/T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T G T T T T T T G T T T T G T T G T T G T
rs226837979
MGI SNP Detail
Alliance Variant		 Chr13:29135657 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476395 within coordinates of
Sox4 mRNA-UTR
Tssr121918 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T T T A A A T A A A A A A T A A A A T A A T A A T
rs250093373
MGI SNP Detail
Alliance Variant		 Chr13:29136144 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 Coding-Synonymous
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A G A A A A A A G A A A A G A A G A A G A
rs263573320
MGI SNP Detail
Alliance Variant		 Chr13:29136281 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 Coding-NonSynonymous
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231960574
MGI SNP Detail
Alliance Variant		 Chr13:29136300 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 Coding-Synonymous
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239604898
MGI SNP Detail
Alliance Variant		 Chr13:29136389 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 Coding-NonSynonymous
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257300168
MGI SNP Detail
Alliance Variant		 Chr13:29136726 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476396 within coordinates of
Sox4 Coding-Synonymous
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224767462
MGI SNP Detail
Alliance Variant		 Chr13:29137103 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476398 within coordinates of
Sox4 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G G G G G G G A G G G G A G G G G G G G
rs243173130
MGI SNP Detail
Alliance Variant		 Chr13:29137262 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476398 within coordinates of
Sox4 mRNA-UTR
Tssr121923 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218676868
MGI SNP Detail
Alliance Variant		 Chr13:29137297 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476398 within coordinates of
Sox4 mRNA-UTR
Tssr121924 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs232864622
MGI SNP Detail
Alliance Variant		 Chr13:29137418 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476398 within coordinates of
Sox4 mRNA-UTR
Tssr121927 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259606715
MGI SNP Detail
Alliance Variant		 Chr13:29137558 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476398 within coordinates of
Sox4 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217340655
MGI SNP Detail		 Chr13:29137717 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr403686 within coordinates of
Rr476399 within coordinates of
Sox4 35 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T T G T T T T T T G T T T T G T T G T T T T
rs240278877
MGI SNP Detail		 Chr13:29137923 Cpgi5398 within coordinates of
Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476399 within coordinates of
Sox4 241 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T C T T T T T T C T T T T C T T C T T C T
rs244804492
MGI SNP Detail		 Chr13:29137979 Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476399 within coordinates of
Sox4 297 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs213779857
MGI SNP Detail		 Chr13:29137981 Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476399 within coordinates of
Sox4 299 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578551182
MGI SNP Detail		 Chr13:29137994 Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476399 within coordinates of
Sox4 312 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230867041
MGI SNP Detail		 Chr13:29138006 Gm46405 within coordinates of
Gm61652 within coordinates of
Rr476399 within coordinates of
Sox4 324 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G G G A A A G A A A A A A G A A A A G A A G A A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248371908
MGI SNP Detail		 Chr13:29138303 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 621 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs227224723
MGI SNP Detail		 Chr13:29138352 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 670 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580649919
MGI SNP Detail		 Chr13:29138439 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 757 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C
rs239600160
MGI SNP Detail		 Chr13:29138548 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 866 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs263319124
MGI SNP Detail		 Chr13:29138687 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1005 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs224207233
MGI SNP Detail		 Chr13:29138693 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1011 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs584673963
MGI SNP Detail		 Chr13:29138700 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1018 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49174299
MGI SNP Detail		 Chr13:29138712 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1030 bp upstream
 SNP C/G C G
rs257436395
MGI SNP Detail		 Chr13:29138726 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1044 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218793292
MGI SNP Detail		 Chr13:29138826 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1144 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236965949
MGI SNP Detail		 Chr13:29138863 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1181 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs264328032
MGI SNP Detail		 Chr13:29138885 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1203 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233662233
MGI SNP Detail		 Chr13:29138915 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1233 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs47321419
MGI SNP Detail		 Chr13:29138969 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1287 bp upstream
 SNP C C C
rs49578194
MGI SNP Detail		 Chr13:29138976 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1294 bp upstream
 SNP A/G A G
rs265799589
MGI SNP Detail		 Chr13:29138990 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1308 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48364511
MGI SNP Detail		 Chr13:29139004 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1322 bp upstream
 SNP A/C C A
rs227184785
MGI SNP Detail		 Chr13:29139032 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1350 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48988768
MGI SNP Detail		 Chr13:29139039 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1357 bp upstream
 SNP C/T C T
rs213903511
MGI SNP Detail		 Chr13:29139056 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1374 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs230986159
MGI SNP Detail		 Chr13:29139088 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1406 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242464828
MGI SNP Detail		 Chr13:29139122 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1440 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G T G
rs219497476
MGI SNP Detail		 Chr13:29139186 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1504 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs242144737
MGI SNP Detail		 Chr13:29139190 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1508 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs259544897
MGI SNP Detail		 Chr13:29139203 Gm46405 within coordinates of
Gm61652 within coordinates of
Sox4 1521 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T T C C C C C C C C C C C T C C C C T C C C C C C C
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Showing SNP(s) 1 - 100 of 115
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory