rs107597540 SNP Detail

Summary

• ID
  rs107597540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18341024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TATTGAAGAG CCAACGGATG
  K
  AGACCCCAGT GTTGTCTGAG AAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148453520	ENSMUSSNP3263325	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss322115481	CHEV_7_19192448	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107597540					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18341024 () rs orientation: forward

Symbol	Name	Function Class
Psg23	pregnancy-specific beta-1-glycoprotein 23	within coordinates
Tssr2096	transcription start site region 2096	42 bp upstream