rs107598046 SNP Detail

Summary

• ID
  rs107598046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65141032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG TAAGAAAAAC TCACCACCAA
  W
  ACAATCAGAA TACACTAGCT CTAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149170496	ENSMUSSNP947881	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss319746477	CHEV_1_65148447	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107598046					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65141032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	1075 bp proximal
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	1221 bp downstream
Tssr7112	transcription start site region 7112	1475 bp downstream
Tssr7113	transcription start site region 7113	1357 bp downstream
Tssr7114	transcription start site region 7114	1343 bp downstream
Tssr7115	transcription start site region 7115	1331 bp downstream
Tssr7116	transcription start site region 7116	1269 bp downstream
Tssr7117	transcription start site region 7117	1230 bp downstream
Tssr7118	transcription start site region 7118	1177 bp downstream
Tssr7119	transcription start site region 7119	1173 bp upstream
Tssr11968	transcription start site region 11968	1426 bp upstream
Tssr11969	transcription start site region 11969	1403 bp upstream
Tssr11970	transcription start site region 11970	1235 bp upstream
Tssr11971	transcription start site region 11971	1211 bp upstream
Tssr11972	transcription start site region 11972	1190 bp upstream
Tssr11973	transcription start site region 11973	1134 bp downstream
Tssr11974	transcription start site region 11974	1209 bp downstream
Tssr11975	transcription start site region 11975	1276 bp downstream
Tssr11976	transcription start site region 11976	1490 bp downstream