rs107598795 SNP Detail

Summary

• ID
  rs107598795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129061112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC ACCCATGACA TATACCCTCC
  R
  GTCAGGGTCT ATTCTAGGGG AAATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144458646	ENSMUSSNP7204333	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321689240	CHEV_5_129489923	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs107598795					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129061112 () rs orientation: forward

Symbol	Name	Function Class
Rr109750	regulatory region 109750	1912 bp distal
Rr127045	regulatory region 127045	1912 bp distal
Rr127046	regulatory region 127046	512 bp distal
Stx2	syntaxin 2	509 bp downstream