rs107600560 SNP Detail

Summary

• ID
  rs107600560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG CACAGAGTAA TATACAGAGC
  R
  CCGAAGAAGG GCAAGAATCA TTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147290204	ENSMUSSNP4555154	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323387264	CHEV_10_90543773	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107600560					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916890 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	1155 bp proximal
Ikbip	IKBKB interacting protein	1912 bp upstream
Rr402144	regulatory region 402144	1826 bp upstream
Rr436975	regulatory region 436975	1243 bp distal
Rr436976	regulatory region 436976	707 bp proximal
Rr436977	regulatory region 436977	1391 bp proximal
Tssr95222	transcription start site region 95222	1063 bp upstream
Tssr95223	transcription start site region 95223	1996 bp upstream
Tssr98900	transcription start site region 98900	1528 bp downstream
Tssr98901	transcription start site region 98901	1625 bp downstream
Tssr98902	transcription start site region 98902	1655 bp downstream
Tssr98903	transcription start site region 98903	1676 bp downstream
Tssr98904	transcription start site region 98904	1755 bp downstream