rs107601849 SNP Detail

Summary

• ID
  rs107601849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88371872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGAGGGGA GCACCGTGGC
  GTAGTGGGTT GGAGAGGAAA GGGGGACGAC ACAGCGGAAG GGTAACTGCA CTGCACACGA
  GGGAGGGGGC TGGAAATGGC CGATAGCTTC TATATTTATT TATTTAAAGG TATTGATTTA
  ACGGGTTCTT CCCCGGGGTT CTGTAACTAA AGGCAAACTG TGCAGCAAAG ATGTTGTGGT
  Y
  GAGAGAGGGG CCGAGGCTCC CCCTGCCCTG CGACCTGGAA GGGGGCACGC AAGTTCCCCA
  GCCAGCGCGG CGGACCACTC CGGCGCTCCT CTCCCCCTCC TCCAGGGCAA GGGGGAGCCC
  ACAGAGAAGG GGAAAACAAG TTCCCCGGCC AGCCTCACCG CCCCACGCAG CCAGCCGTCC
  CCCCACCTAC CACGAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500670	CHEV_17_88463784	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107601849					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88371872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	within coordinates
Rr340317	regulatory region 340317	within coordinates
Rr405528	regulatory region 405528	1655 bp upstream
Tssr146222	transcription start site region 146222	336 bp upstream
Tssr146223	transcription start site region 146223	374 bp upstream
Tssr149795	transcription start site region 149795	1194 bp downstream
Tssr149796	transcription start site region 149796	1327 bp downstream
Tssr149797	transcription start site region 149797	1408 bp downstream
Tssr149798	transcription start site region 149798	1538 bp downstream
Tssr149799	transcription start site region 149799	1560 bp downstream