rs107604233 SNP Detail

Summary

• ID
  rs107604233
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34444350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAAGAAACAC AAAACTAATT TTTAAACAAA GGAAAACTTC
  TGAGTATGAT GGAGGAAATA TAAAGGCTCA GCGTTTTCCT AATGATGTCT TAACCAGTTT
  T
  GAAGCTTATT TATACCCTTG GCAATCAGTT TTAAACTAAA ATAGAGTATG TTATTACTAG
  ATGTTAATTT TTTTATATTT AAAAGACTGC AGATCTCTCC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146939020	ENSMUSSNP6669993	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107604233					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34444350 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	within coordinates
Gm54017	predicted gene, 54017	within coordinates
Tssr150452	transcription start site region 150452	1501 bp upstream
Tssr150453	transcription start site region 150453	1863 bp upstream
Tssr150454	transcription start site region 150454	1888 bp upstream