rs107605456 SNP Detail

Summary

• ID
  rs107605456
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116696170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTCCTA GGAATGGATT
  TGCCAGGACT GAATCTTCCC AGTCCACAGA AGACCTACGC AATGATGGGC TTTGTGGTCT
  GGCACATCGG GACTGAGGTC ATTCTGGAGA TACATGCTTA CCGTCTCTCT AGAAAAGGTA
  GCCTGCTTGG GAAGCACTGC TGCGAGGCTG GAGAGGTGGG GTGGGTGGTA CAAGCACAAA
  A
  ATCTGAGTTT GAGTCTCCAG CATCCACATA ACGAGGCAGG CATGGCCATA CGTGTCAGTA
  ACCTGTGCTG TGTGGGAAGG GATTCAGGGA GGTTGCTGGG ATCGTCTGGC TGCCAGCCCA
  GCTTGAAGTT CAGTGAGAGT CCATGACTGA AGGAAATAAG ACAGAGTCCC CATGTGTGCC
  TGTGAGCTCG CACATGGCAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135674964	ENSMUSSNP3505003	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs107605456					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116696170 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			Intron
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			1568 bp proximal
Rr583801	regulatory region 583801			1599 bp proximal
Rr583802	regulatory region 583802			1840 bp proximal
Tssr31391	transcription start site region 31391			1056 bp upstream
Tssr31392	transcription start site region 31392			1142 bp upstream
Tssr31393	transcription start site region 31393			1176 bp upstream
Tssr31394	transcription start site region 31394			1198 bp upstream
Tssr31395	transcription start site region 31395			1843 bp upstream