rs107605527 SNP Detail

Summary

• ID
  rs107605527
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATTTTCT GTGATTTTCA GTTTTCTTAC CATATTCCAG
  GTCCTACAGT GTGCATTTCT CATTTTTCAC GTTTTTCAGT GATTTCGTCA TTTTTCAAGT
  C
  GTCAAGTGGA AGTTTCTCAT TTTCCATGAT TTTCAGCTTT CTAGCCATAT TCCAGGTATT
  ACAGTGGACA TTTCCTTATT TTCGACCTTT ATCAGTTTT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136173295	ENSMUSSNP3108835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs107605527					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1682 bp distal
Cpgi21329	CpG island 21329	41 bp distal
Mir101c	microRNA 101c	398 bp downstream
Rr673616	regulatory region 673616	1021 bp distal
Rr673617	regulatory region 673617	361 bp distal
Rr673618	regulatory region 673618	30 bp proximal
Tssr83601	transcription start site region 83601	1928 bp downstream
Tssr83602	transcription start site region 83602	1884 bp downstream
Tssr83603	transcription start site region 83603	1870 bp downstream
Tssr83604	transcription start site region 83604	916 bp downstream
Tssr83605	transcription start site region 83605	237 bp downstream
Tssr83606	transcription start site region 83606	73 bp downstream
Tssr88027	transcription start site region 88027	1898 bp upstream
Tssr88028	transcription start site region 88028	1874 bp upstream
Tssr88029	transcription start site region 88029	201 bp upstream
Tssr88030	transcription start site region 88030	77 bp upstream