rs107606030 SNP Detail

Summary

• ID
  rs107606030
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77543009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAGAAAGGGG GCTGGTGAGA TGGCTCAGTG GGTAAGAGTA
  CCCAACTGCT CTTCTGAAGG TCCGAAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA
  C
  CATCCGTAAT GAGATCTGAC TCCCTCTTCT GGAGTGTCTG AAGACAACTA CAGTGTATTT
  ACATATAATA AAAATAAATA AATCTTTAAA AAAAAAAAGA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148477217	ENSMUSSNP6559445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107606030					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77543009 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	1005 bp upstream
Rr683389	regulatory region 683389	283 bp proximal
Rr683390	regulatory region 683390	784 bp proximal
Rr683391	regulatory region 683391	1090 bp proximal
Rr683392	regulatory region 683392	1687 bp proximal
Tssr86194	transcription start site region 86194	742 bp upstream
Tssr86195	transcription start site region 86195	767 bp upstream
Tssr86196	transcription start site region 86196	809 bp upstream
Tssr86197	transcription start site region 86197	848 bp upstream
Tssr86198	transcription start site region 86198	892 bp upstream
Tssr86199	transcription start site region 86199	894 bp upstream
Tssr86200	transcription start site region 86200	909 bp upstream
Tssr86201	transcription start site region 86201	986 bp upstream