rs107606190 SNP Detail

Summary

• ID
  rs107606190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT AATATGGTGA TATACCACCG
  Y
  AAGACTTAGA ATGTTGAGGC AGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007393	PARCsnp_1.17775	PARC_SEQ	INBRED	f	SNP	T	C
ss120010295	PARCsnp_1.07415	PARC_SEQ	INBRED	f	SNP	T	C
ss320123224	CHEV_1_174138544	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs107606190					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035980 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1481 bp downstream
Cpgi1038	CpG island 1038	1460 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1682 bp upstream
Rr396578	regulatory region 396578	873 bp downstream
Rr423485	regulatory region 423485	1620 bp distal
Rr423486	regulatory region 423486	1119 bp distal
Tssr294	transcription start site region 294	1780 bp upstream
Tssr295	transcription start site region 295	1730 bp upstream
Tssr296	transcription start site region 296	1654 bp upstream
Tssr297	transcription start site region 297	1620 bp upstream
Tssr10179	transcription start site region 10179	1910 bp upstream
Tssr15164	transcription start site region 15164	1748 bp upstream
Tssr15165	transcription start site region 15165	1658 bp upstream
Tssr15166	transcription start site region 15166	1627 bp upstream
Tssr15167	transcription start site region 15167	707 bp upstream
Tssr15168	transcription start site region 15168	1693 bp downstream
Tssr15169	transcription start site region 15169	1780 bp downstream
Tssr15170	transcription start site region 15170	1807 bp downstream
Tssr15171	transcription start site region 15171	1821 bp downstream
Tssr15172	transcription start site region 15172	1903 bp downstream
Tssr15173	transcription start site region 15173	1995 bp downstream