rs107606429 SNP Detail

Summary

• ID
  rs107606429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24910517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCGGTT CACCCATGAG
  CTTACACTTC TGCTGTTTAC CTTTTTTCAT TGCTGAGTAC TTATCCCTCT GTCTGTGCTG
  ACCGCTCTCA AATGCCAGCT CAAACCATAA CCTTCCTTCA CACAAGTTCT GCTTGTCTTG
  ACCCAGATGC TCTGTGAACA GGGACAAAAT GAAGCTTTTT TTTTTTTTTT TTTTTTTTTT
  K
  GTTTTTCAAG ACAGGGTTTC TCTTCTCTGT GTAGCCGTGG CTGTCCTGGA ACTAACTCTG
  TAGACTAGGC TGGCCTCTAA CTCAGAAATT CACTGGCTTC TGCCTCCCAA GTGCTGGGAT
  TATAGGCATG TGTCACCACG CCTGGCTTGA TTTACTTTCT AAAAATAAAT TTATTGGCTG
  GGCAGTGGTA ACGCATGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss130676060	NCBIM37_NT_039649_chr17_24828488	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	G	G	G	G	G	G	G	T	T	G	T	G	T	T	T	G	T	T	T	T	T	G	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs107606429					SNP	T	T	T	T	T	T	T	G	G	G	G	G	G	G	T	T	G	T	G	T	T	T	G	T	T	T	T	T	G	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130676060	NCBIM37_NT_039649_chr17_24828488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24910517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8738	CpG island 8738	1304 bp distal
Gfer	growth factor, augmenter of liver regeneration	1647 bp downstream
Rr339325	regulatory region 339325	516 bp distal
Syngr3	synaptogyrin 3	1594 bp upstream
Tssr146762	transcription start site region 146762	1656 bp upstream
Tssr146763	transcription start site region 146763	1583 bp upstream