rs107607252 SNP Detail

Summary

• ID
  rs107607252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3492301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTTTAT TTGACTTACC
  GATCCACCAT CCGGGATCCA GGGAAGCCAA GGCAGAGACC TGAAGACAGC GACTGAAGCA
  GACACAATGG AGAGATGCTG CTCGCTGACT CCTAGACATC CAGCTACATG TTTGTCCGCC
  TGTTTGTCTG CCTGTGTTTT GAGATACAGG GTCTCGCTGT GCAGCTCTGG TCTAGAACTC
  R
  CAGGAATCAT TCTGCCTTCT CTGCTGGATT AAGGATGTAT GCCACCGTGT CCTGTTCAGC
  TACGCTTCTT ATACAGTGGA GGCCCGCTTG CTTAGGCATG GTACCACCCA CAGTGGGCTG
  GGCCTTCTAC ATAAGTTAGT AATTGATTAG CCCCATAGAG ATGCCCATAG GTTGGTGTGA
  TGGAGGCAGC TTTGAAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146002430	ENSMUSSNP4566943	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107607252					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3492301 () rs orientation: forward

Symbol	Name	Function Class
Rr364729	regulatory region 364729	502 bp distal
Rr542416	regulatory region 542416	805 bp distal
Tssr157389	transcription start site region 157389	1394 bp upstream
Tssr157390	transcription start site region 157390	1025 bp upstream
Tssr157391	transcription start site region 157391	997 bp upstream