rs107609602 SNP Detail

Summary

• ID
  rs107609602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGAACAAT AGGAGGGAGG
  CTGAAGGGTA GTGGGCGTCG GCCAGGTCCC TGCTGGAGGG AGTGGAGGCC AGTGGTGCTG
  CTGGTCCCCC AGGTTAGCCC AGGCTACCGG CCTGAACGCC AAGCTCTCAG TCAAAGGCGA
  GGTGAAGCAG ACTTGGTGCC GGTGGCGACT CTCTAGGAGG TGGAGTAAGG CCGAGCCCAC
  R
  GGGCTGGGAC CTGGAGGGAG AGGAGGCTCC GTGGAGAGTC TCGTCTTCGT GGTCCCGCTG
  CTCGCCTCGG CCTCTGAGCT CTGCCTAGGC TCTGGTGGGC GTCTGTCCCA CGTGGGGGAA
  GCCAGCGGCG CGGGCTCGCG GGGCGCACAC CCCTCCGAGT TCCCCTCCCT GGGATCGGAC
  GCGCCTGCTC CTGGGCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148072156	ENSMUSSNP2361527	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs107609602					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	within coordinates
Epb41l1	erythrocyte membrane protein band 4.1 like 1	215 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21155	transcription start site region 21155	1986 bp downstream
Tssr21156	transcription start site region 21156	26 bp upstream
Tssr21157	transcription start site region 21157	143 bp upstream
Tssr21158	transcription start site region 21158	344 bp upstream
Tssr21159	transcription start site region 21159	358 bp upstream
Tssr21160	transcription start site region 21160	381 bp upstream
Tssr21161	transcription start site region 21161	389 bp upstream
Tssr21162	transcription start site region 21162	422 bp upstream
Tssr21163	transcription start site region 21163	435 bp upstream
Tssr21164	transcription start site region 21164	468 bp upstream