rs107609681 SNP Detail

Summary

• ID
  rs107609681
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:17668162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA CATGTGGAAT GGACTAGATG
  K
  TTTTAGTCTT ATTCTGTTCC ATATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325311080	CHEV_17_17584864	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107609681					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:17668162 () rs orientation: forward

Symbol	Name	Function Class
Lix1	limb and CNS expressed 1	within coordinates
Rr392356	regulatory region 392356	561 bp upstream
Rr522858	regulatory region 522858	640 bp proximal
Tssr142793	transcription start site region 142793	960 bp upstream
Tssr142794	transcription start site region 142794	994 bp upstream