rs107610027 SNP Detail

Summary

• ID
  rs107610027
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23733562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTACTAT GTGCAATTTT
  CTGAGGAACT GCCAAACTGA TTTCCAGAGT GGATGCACCA TCTTGCGATC CCATCAACAT
  TGGAGGAGTG TTCCTCTTTC TCCACATCCT AGCCAGCATC TGCTGTCACC TGAGTTTTTG
  ATCTTAGCCA TTCTGACTGG TGTGAGGTGG AATCTCAGGG TTGTTTTAAT TTGCATTTCC
  C
  TGATGACTAA GGATGCTAAA CATTTCTTTA GGTGTTTCTC AGCCATTCTG TATTCCTCAG
  TTGAGATTTC CTTGTTTTCC ACTGTACCCC ATTTTTTAAT AGGATTATTT GGTTCTCTGG
  AGTCTAACTT CTTGAATTCT TTGTATATTT TGGATCTTAG CCCTCTGTGG GATGTAGGGT
  TGGTAAATAT CTTTTCCCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10J	DBA/1J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss130667942	NCBIM37_NT_039649_chr17_23651555	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10J	DBA/1J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs107610027					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130667942	NCBIM37_NT_039649_chr17_23651555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23733562 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	866 bp upstream