rs107612910 SNP Detail

Summary

• ID
  rs107612910
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATATGC TTCCCCTACA
  ACACACTGCT AGGAACAGGT GGGGCATGAG TCTCTACAAT GTACTAATAG ATGATCCAGT
  ACGGACTGCC AAGACATAGA CAACTGTGTT CAGTGCCTGT TTGCAATGAA CATTTGTTGC
  AGCCATCAGG AATATGGAGA TATATCACAA AAAGAATGAC ACATGTTTAA ATGAAAATTA
  K
  CCTACTTTGT TTTGTTTTGA GATGAATCTC ACTCTGTAGC CCAAGCAAAA GTTGAACTCA
  AGTTAATACT CCTGCCTCAG TTTCTGAGTA CTGGGATTGC AGGTGTGAGC TAACACACCT
  GGCTCATACT TTTCATTTAT GGACTAAAAT CAGATTCCAG CTTCATCTGT AGGAAAGCTA
  TTTGGTGACA TCAAGCGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245805	ENSMUSSNP4627819	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107612910					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879090 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	800 bp distal
Tssr600	transcription start site region 600	1040 bp upstream
Tssr601	transcription start site region 601	1029 bp upstream
Tssr602	transcription start site region 602	1868 bp downstream
Tssr19429	transcription start site region 19429	1312 bp downstream
Tssr19430	transcription start site region 19430	1202 bp downstream
Tssr19431	transcription start site region 19431	1118 bp downstream
Tssr19432	transcription start site region 19432	1035 bp downstream
Tssr19433	transcription start site region 19433	445 bp downstream
Tssr19434	transcription start site region 19434	401 bp downstream
Tssr19435	transcription start site region 19435	560 bp upstream
Tssr19436	transcription start site region 19436	941 bp upstream
Tssr19437	transcription start site region 19437	1676 bp upstream
Tssr19438	transcription start site region 19438	1759 bp upstream
Tssr19439	transcription start site region 19439	1824 bp upstream
Tssr25660	transcription start site region 25660	1291 bp upstream
Tssr25661	transcription start site region 25661	1270 bp upstream
Tssr25662	transcription start site region 25662	1167 bp upstream
Tssr25663	transcription start site region 25663	1141 bp upstream
Tssr25664	transcription start site region 25664	1100 bp upstream
Tssr25665	transcription start site region 25665	992 bp upstream
Tssr25666	transcription start site region 25666	438 bp upstream
Tssr25667	transcription start site region 25667	395 bp upstream
Tssr25668	transcription start site region 25668	368 bp upstream
Tssr25669	transcription start site region 25669	305 bp upstream
Tssr25670	transcription start site region 25670	592 bp downstream
Tssr25671	transcription start site region 25671	635 bp downstream
Tssr25672	transcription start site region 25672	704 bp downstream
Tssr25673	transcription start site region 25673	739 bp downstream
Tssr25674	transcription start site region 25674	943 bp downstream
Tssr25675	transcription start site region 25675	991 bp downstream
Tssr25676	transcription start site region 25676	1028 bp downstream
Tssr25677	transcription start site region 25677	1055 bp downstream
Tssr25678	transcription start site region 25678	1727 bp downstream
Tssr25679	transcription start site region 25679	1736 bp downstream
Tssr25680	transcription start site region 25680	1749 bp downstream
Tssr25681	transcription start site region 25681	1796 bp downstream
Tssr25682	transcription start site region 25682	1878 bp downstream
Tssr25683	transcription start site region 25683	1885 bp downstream
Tssr25684	transcription start site region 25684	1976 bp downstream