rs107615515 SNP Detail

Summary

• ID
  rs107615515
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATAGCCTCGA AGTATTGTAC CATCTCTCAG CTTGTATTCA
  TTTAGAACTG TCAGTCAAGC CCAGGACTGA TGTTACATAT ACACTGTCCT GCACACATGG
  T
  GAAAACCTGT GTTTCTAACT GTTGGAAACC ACTCTAGCAG GACAACTTAA AACCAAAATC
  AGAAGCAAGA CAAACAAACA AACAAACAAC AACAACAACA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139749930	ENSMUSSNP6633362	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107615515					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415254 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	196 bp upstream
Rr404213	regulatory region 404213	832 bp downstream
Rr404214	regulatory region 404214	1877 bp upstream
Tssr4479	transcription start site region 4479	1919 bp downstream
Tssr126623	transcription start site region 126623	1209 bp downstream
Tssr126624	transcription start site region 126624	1171 bp downstream
Tssr126625	transcription start site region 126625	1017 bp downstream
Tssr126626	transcription start site region 126626	992 bp downstream
Tssr126627	transcription start site region 126627	910 bp downstream
Tssr126628	transcription start site region 126628	660 bp downstream
Tssr126629	transcription start site region 126629	within coordinates
Tssr126630	transcription start site region 126630	34 bp upstream
Tssr126631	transcription start site region 126631	1764 bp upstream
Tssr126632	transcription start site region 126632	1989 bp upstream
Tssr129769	transcription start site region 129769	1211 bp upstream
Tssr129770	transcription start site region 129770	1132 bp upstream
Tssr129771	transcription start site region 129771	587 bp downstream
Tssr129772	transcription start site region 129772	1443 bp downstream