rs107616209 SNP Detail

Summary

• ID
  rs107616209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19193296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GACAAAGAGA AACTCCAGGA CTGGAAGACT GCCGAGGACA
  GGAATAAAGG AGAAGCAGCA AGAAAGGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  S
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGACAGAGAG AGACAGAGAG
  AGAGAACTGT GTACCTGTCA TTCGGACCCT CAGGAGGTTG A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148476733	ENSMUSSNP4950563	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107616209					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19193296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	298 bp distal
Gm23099	predicted gene, 23099	1426 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	550 bp upstream
Rr400149	regulatory region 400149	314 bp downstream
Rr643146	regulatory region 643146	561 bp distal
Rr643147	regulatory region 643147	60 bp distal
Tssr64858	transcription start site region 64858	436 bp downstream
Tssr70918	transcription start site region 70918	686 bp upstream
Tssr70919	transcription start site region 70919	632 bp upstream
Tssr70920	transcription start site region 70920	595 bp upstream
Tssr70921	transcription start site region 70921	571 bp upstream
Tssr70922	transcription start site region 70922	515 bp upstream
Tssr70923	transcription start site region 70923	118 bp upstream