rs107616856 SNP Detail

Summary

• ID
  rs107616856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTTGT ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  GCGCGCGCGC GCGCGCGCCA TTGTCCTATG CCTTAAATAC TCATTCCCAC TGGTTGGAGC
  CCAATTCAAA GCATTCTAAG AGTCACAGTT AGCATCTCTG TTTTCATCAA TGGAGACTGG
  Y
  GTCTCTGAGC CAGTTGGATG CCCAGGTTTG TCTCTGAAGC CAGCGCTGCC TCAGCGGCTC
  TCAGACTCTC CCCTCTGTGT ACTGGGGACA CTTCCCCCCC ATTCCACCTC TCCTGAGCCA
  CATGCCCTGC TTCGCCCTAA CTGCAGATGG TGGCCACAAG AAGAACCCCA AACCAGATCT
  CTTCTGGCCC CCAAATTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147736184	ENSMUSSNP5052153	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107616856					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	928 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	395 bp proximal
Rr603761	regulatory region 603761	1386 bp proximal
Rr603762	regulatory region 603762	1896 bp proximal
Tssr40063	transcription start site region 40063	899 bp downstream
Tssr40064	transcription start site region 40064	838 bp downstream
Tssr40065	transcription start site region 40065	811 bp downstream
Tssr40066	transcription start site region 40066	707 bp downstream
Tssr40067	transcription start site region 40067	653 bp downstream
Tssr40068	transcription start site region 40068	598 bp downstream
Tssr40069	transcription start site region 40069	471 bp downstream
Tssr40070	transcription start site region 40070	377 bp downstream
Tssr40071	transcription start site region 40071	360 bp downstream
Tssr40072	transcription start site region 40072	315 bp downstream
Tssr40073	transcription start site region 40073	290 bp downstream
Tssr40074	transcription start site region 40074	263 bp downstream
Tssr40075	transcription start site region 40075	239 bp downstream
Tssr40076	transcription start site region 40076	223 bp downstream
Tssr40077	transcription start site region 40077	203 bp downstream
Tssr40078	transcription start site region 40078	1501 bp upstream
Tssr44315	transcription start site region 44315	834 bp upstream
Tssr44316	transcription start site region 44316	736 bp upstream
Tssr44317	transcription start site region 44317	708 bp upstream
Tssr44318	transcription start site region 44318	308 bp upstream
Tssr44319	transcription start site region 44319	660 bp downstream