rs107622414 SNP Detail

Summary

• ID
  rs107622414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88747144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAGAC TTCTTTTTTT
  TTTTTTTTTT TTTTTTTTTT CTGAGGCAGG GTTTCTCTGT GTAGCCCTGG CTGTCCTGGA
  ACTCACTCTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC CGCCTGCCTC TGCCTCCCGA
  GTGCTGGGAT GAAAGGCGCG CGCCACCACC GCGCAGCTGA GACAGAAACT TCTTATGAAG
  R
  CCAGGGTGAC CTCTAAATCT TGGCACTCCT CCAGCCTCAC CCTACCCAGT ACTGATACAT
  AAACCTTCAC TGCCAAGGGC AGTTTGATAG GCTACTTCTA GGCTTCAGTT TCCTTCTATG
  TAAAGGGAAT TCCTGAAATT GTAGAGTTGG CAGATTCACT AAAACATGAA GCAACCAGAA
  AGTATACCCC GAAGGGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399389842	MGP_WTSI_17_88839056	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	A	A	A	A	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107622414					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	A	A	A	A	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399389842	MGP_WTSI_17_88839056	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88747144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	476 bp proximal
Foxn2	forkhead box N2	995 bp upstream
Rr340320	regulatory region 340320	56 bp proximal
Rr343689	regulatory region 343689	1344 bp distal
Rr405533	regulatory region 405533	647 bp upstream
Tssr146228	transcription start site region 146228	998 bp upstream
Tssr146229	transcription start site region 146229	1026 bp upstream
Tssr146230	transcription start site region 146230	1355 bp upstream
Tssr146231	transcription start site region 146231	1808 bp upstream