rs107622795 SNP Detail

Summary

• ID
  rs107622795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108904155 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A TACCCTAAAG ATGTCCCACC AGGCCACAGG GGCATGTGTT
  CCACTATGTT CATAGCAGCC TTGTTTGTGA TAGCCAGAAG CTGTAAACAA CCTAGATGTC
  Y
  CACAACAGAA GAATGGATAC AGAAAATATG GTTCATTTAC ACAATGGAGT ACTACTCAGC
  TATTAAGAAC AAGGACAGGA CTCTGTAGGA GGACCAGCAG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145637768	ENSMUSSNP3177097	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107622795					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108904155 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	1013 bp distal
Gm36876	predicted gene, 36876	within coordinates
Rr458739	regulatory region 458739	1212 bp proximal
Tssr105627	transcription start site region 105627	1574 bp downstream
Tssr105628	transcription start site region 105628	1503 bp downstream
Tssr105629	transcription start site region 105629	1470 bp downstream
Tssr105630	transcription start site region 105630	1423 bp downstream
Tssr105631	transcription start site region 105631	1335 bp downstream
Tssr111515	transcription start site region 111515	1597 bp upstream
Tssr111516	transcription start site region 111516	1547 bp upstream
Tssr111517	transcription start site region 111517	1476 bp upstream
Tssr111518	transcription start site region 111518	1458 bp upstream
Tssr111519	transcription start site region 111519	1447 bp upstream
Tssr111520	transcription start site region 111520	1389 bp upstream
Tssr111521	transcription start site region 111521	1329 bp upstream