rs107623500 SNP Detail

Summary

• ID
  rs107623500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112980084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT CCTCCTCTGC TCTGCTGCCA
  K
  AGGTGCTCAC CCTCAGGACT TAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss138730677	ENSMUSSNP2128200	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324172779	CHEV_12_114254675	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107623500					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112980084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	1245 bp distal
Pacs2	phosphofurin acidic cluster sorting protein 2	within coordinates
Rr473707	regulatory region 473707	1921 bp distal
Rr473709	regulatory region 473709	1761 bp distal
Rr473710	regulatory region 473710	within coordinates
Tssr115451	transcription start site region 115451	1994 bp downstream
Tssr115452	transcription start site region 115452	1951 bp downstream
Tssr115453	transcription start site region 115453	1925 bp downstream
Tssr115454	transcription start site region 115454	1907 bp downstream
Tssr115455	transcription start site region 115455	1896 bp downstream