rs107623819 SNP Detail

Summary

• ID
  rs107623819
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45862175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC ATTTCCTATT CCTCCCTCCT
  A
  AGAGAGAACA GATGGTCTTC TATTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403381	CHEV_17_45688198	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107623819					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45862175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9192	CpG island 9192	1264 bp distal
Rr405301	regulatory region 405301	881 bp upstream
Rr527421	regulatory region 527421	1583 bp distal
Rr527424	regulatory region 527424	1082 bp distal
Rr527425	regulatory region 527425	within coordinates
Rr527426	regulatory region 527426	1420 bp proximal
Tmem151b	transmembrane protein 151B	1572 bp upstream
Tssr148206	transcription start site region 148206	1666 bp upstream
Tssr148207	transcription start site region 148207	1581 bp upstream
Tssr148208	transcription start site region 148208	1530 bp upstream