rs107625800 SNP Detail

Summary

• ID
  rs107625800
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20972313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAAGGC TCCCATGTAC AAATATGCTG TATGAGGTAG
  CAGCTGAGGT CAGACATTCT GTATGGCTTC TGGTATTTTA CCAGCACTGC CTGTGAATAA
  G
  TTCAGCCTTC AAAAATAGCT GTACCAGTGG GTAGCTTTTA TTCCTGCATT AGGCAATAAA
  CTGCAATCCC AAAACTCTGC AACTCTCTGC CACTTTCCA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137287043	ENSMUSSNP6872579	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107625800					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20972313 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	1050 bp upstream
Cpgi4472	CpG island 4472	788 bp distal
Rr463638	regulatory region 463638	1268 bp distal
Rr463639	regulatory region 463639	560 bp distal
Rr463640	regulatory region 463640	822 bp distal
Rr463641	regulatory region 463641	775 bp distal
Tssr115849	transcription start site region 115849	1229 bp upstream
Tssr115850	transcription start site region 115850	1076 bp upstream
Tssr115851	transcription start site region 115851	1039 bp upstream