rs107625865 SNP Detail

Summary

• ID
  rs107625865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGGTCT TTGCACTTTG
  CCATAAACAA GCACTGTGAT TTTGTTTTTA TCTTAATTGT GAAGGAAGAG AGATGAGAAA
  GATGGGTGCT GGTGGCGACA GGGGGGTGTT AATCAGGTGG TGGTCAGGGT TCTGAGGAAA
  GCAGCCCTCT TCTTCTTATA GGTCTTTGTT TTCTTTTAAA TATTTAATTT TTGTGTGTAC
  R
  AATGTATGGA ATTCATATAT ATGTGTATAT GTGTATATAA GCATGCATAT GTGTGTGTAT
  ATATATATAT ATACATTTAT ACTCAAATGC ATAGGTGTGT CTATATACAT ATATGTACAT
  ATATATACAT ATACATGTAT ATATCATATG CATGCAGTGC CCTCAGAGGC CAGAAGGGGC
  GTCATATCCC CTAGAACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132872504	ENSMUSSNP4053063	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323861649	CHEV_11_115051234	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs107625865					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1953 bp distal
Rr459796	regulatory region 459796	1645 bp distal
Rr459797	regulatory region 459797	1310 bp distal
Rr459798	regulatory region 459798	886 bp distal
Rr459799	regulatory region 459799	294 bp distal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	1240 bp upstream
Tssr3730	transcription start site region 3730	293 bp downstream
Tssr111736	transcription start site region 111736	1146 bp upstream