rs107628597 SNP Detail

Summary

• ID
  rs107628597
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6885642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACCTTTCCTG ATCTCTCTGA AGCAGAGCCG CTCTCTCATG
  GTCACAGCAT CGAGATTGCG ACTGCAGGTC AAAGAGCAGG GTTCAGCCCC TGCTGTAGAA
  S
  AACCCTCAGT CTGGTTGTTT CCTCATCGCG GGGAGGGGCA GGACAGCTGT TCCCAGCACC
  CTGGCAGTCT TTGATCCCTG CAGTATCCTT CAGTAAAGGG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145090377	ENSMUSSNP1152033	ENSEMBL	ENSEMBL_Sanger	r	SNP	G
ss145092795	ENSMUSSNP5777421	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107628597					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6885642 () rs orientation: forward

Symbol	Name	Function Class
Gm64560	predicted gene, 64560	within coordinates
Rr521400	regulatory region 521400	721 bp distal
Rr521401	regulatory region 521401	within coordinates
Rr521402	regulatory region 521402	1936 bp proximal
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates