rs107628660 SNP Detail

Summary

• ID
  rs107628660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:116590676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGCAA AGTATATCTT
  GCAGAAACAT GTGTTGAATA AATAAATACA TATGAGGGAT AGGAACAGGT TGTCATCCGA
  TGCACCACAT TTGCTCCTAT AAGGGAAGGA AGACAGATGG GTCAAGGACA CAAGAAAACC
  CACAGAACCA ACTAACTTGA GCTCATAGGG GCTCACAGAG ACTGAAGTGG CAACCATGTA
  R
  GGGGTCTGGA TGGGTCTGAC CTAGGCCCTT TGCATATATG TTAAGTTGTG CCCTTTGTCT
  TGTAGAACTC CTAACTGTGG CAGCAGGACT GTCTCTGAAT CTTTTGTCTG CTTTTGGAAT
  ACTTTTCCTC ATATGGGTTG TTTTGCCTTA ATAGGAGGGG AAGTGCCTAG CCTTACTGCA
  TCTCAATATG CCACTTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145742584	ENSMUSSNP5197114	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107628660					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:116590676 () rs orientation: forward

Symbol	Name	Function Class
Rr159555	regulatory region 159555	1725 bp proximal
Rr381374	regulatory region 381374	within coordinates