rs107630834 SNP Detail

Summary

• ID
  rs107630834
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27581798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGCTGAAC ATAGATAAAG AACTATGTGG
  AGTTGTGGGG GCCATCCTGC CCAACTTGCT GTGAGTCTTA TCATGAGTGC GGAAACTtgt
  agcggtgttt gctactttgt gggttcttcc tttttccacc ctttcaaccc cctaacagta
  K
  ataggggagg aaaaaggctt gaaaggaaag agttatctac tggaagattt cttttgagga
  ttaggagggt agactggagc tccttggggc aagtttaagc ttcaccatcc agatagctga
  tttcttcttc ttgttggttc ttctttgtgc                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325346729	CHEV_17_27499769	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107630834					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27581798 () rs orientation: forward

Symbol	Name	Function Class
Gm49794	predicted gene, 49794	within coordinates
Rr334542	regulatory region 334542	1598 bp distal
Rr334543	regulatory region 334543	203 bp proximal
Rr337133	regulatory region 337133	951 bp distal
Tssr147021	transcription start site region 147021	1646 bp downstream