rs107638250 SNP Detail

Summary

• ID
  rs107638250
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85706787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CTGAATTTCT CTCCCCAGCA
  T
  CCATATTAGG GCACAGGAAG AGGTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322752782	CHEV_8_87504057	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107638250					SNP	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss145398724	ENSMUSSNP3724445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85706787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	1112 bp distal
Cpgi20739	CpG island 20739	52 bp distal
Junb	jun B proto-oncogene	1410 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	1936 bp downstream
Rr401033	regulatory region 401033	1199 bp downstream
Rr401034	regulatory region 401034	within coordinates
Tssr78495	transcription start site region 78495	1987 bp downstream
Tssr78496	transcription start site region 78496	1553 bp downstream
Tssr78497	transcription start site region 78497	1529 bp downstream
Tssr78498	transcription start site region 78498	1171 bp downstream
Tssr78499	transcription start site region 78499	29 bp upstream
Tssr78500	transcription start site region 78500	45 bp upstream
Tssr78501	transcription start site region 78501	193 bp upstream
Tssr82223	transcription start site region 82223	1695 bp upstream
Tssr82224	transcription start site region 82224	1618 bp upstream
Tssr82225	transcription start site region 82225	1434 bp upstream
Tssr82226	transcription start site region 82226	839 bp downstream
Tssr82227	transcription start site region 82227	896 bp downstream