rs107638502 SNP Detail

Summary

• ID
  rs107638502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTGTAG ACCAGGCTGG
  CCTCGAACTC AGAAATCCGC CTGCCTCTGC CTCCCAAGTG CTGGGATTCC ACCACCCCCG
  GCTTGAATTC TGCTTTTGAG TCTCAAGGAA ACAAGAGTGG CTATTAAGAA AGACTAGAGC
  CTTAGAGTTA CCGGCCGCAG CTGTGATCCC TCACGGTTGC ACTGTTGCAA AACCAAATCA
  R
  AAAAGTCTTT TATTTAAAAG TACTAAGGGG TTTTGCACAC CACGTACGTT CCCAGTTCAG
  ACCTTGAGCA GGGACTACAT CGAAAGCACA GAATCTCCAA GGCCCATCTT CCCGTCGGCT
  CACTTCACTG TGGTGATCAA GTTCATGGTG GTTTGATATG TTTGTATTAA AGCGAATAAT
  GCACCAAGAC ATGTACCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss147477627	ENSMUSSNP6261036	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321335971	CHEV_4_132288902	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs107638502					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	354 bp distal
Cpgi14970	CpG island 14970	470 bp proximal
Gm69628	predicted gene, 69628	1993 bp upstream
Rr398540	regulatory region 398540	130 bp downstream
Rr601049	regulatory region 601049	532 bp distal
Rr601050	regulatory region 601050	447 bp distal
Rr601051	regulatory region 601051	40 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1144 bp downstream
Tssr43695	transcription start site region 43695	1266 bp upstream
Tssr43696	transcription start site region 43696	549 bp upstream
Tssr43697	transcription start site region 43697	429 bp upstream
Tssr43698	transcription start site region 43698	401 bp upstream
Tssr43699	transcription start site region 43699	1838 bp downstream
Tssr43700	transcription start site region 43700	1850 bp downstream
Xkr8	X-linked Kx blood group related 8	441 bp upstream