rs107639600 SNP Detail

Summary

• ID
  rs107639600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:120102371 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTAA GCTTTTAGTA TATGTTGGCA
  R
  TTATGACCAG TGATGTCTTG ATATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136155521	ENSMUSSNP5535675	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107639600					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:120102371 () rs orientation: reverse

Symbol	Name	Function Class
Ccl28	C-C motif chemokine ligand 28	within coordinates
Rr270687	regulatory region 270687	971 bp distal
Rr270688	regulatory region 270688	within coordinates
Rr270689	regulatory region 270689	1830 bp proximal
Rr282566	regulatory region 282566	within coordinates
Rr282567	regulatory region 282567	1430 bp proximal