rs107642511 SNP Detail

Summary

• ID
  rs107642511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72851089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATAGAGTCT GGACAGCCTT TCCAAAGCCA CTAAAAGGCC
  CAATCTGTCC CTGTCCTCAC CAGTCAATAT TTGGAAAGCA TAGAGGGGTG GAAACAGGAT
  R
  AAAATACTCG ACTCTGGGGT GCCCATGCTC AGGCAGGCCG GAAGCTTCAG AGTGCACGGG
  TGCTTTGGGA CCCAGGTGCA AAAAGGTAGG AACTACCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132417944	ENSMUSSNP2900272	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107642511					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72851089 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	906 bp upstream
Cpgi3227	CpG island 3227	495 bp proximal
Rr450779	regulatory region 450779	170 bp proximal
Rr450780	regulatory region 450780	416 bp proximal
Rr450781	regulatory region 450781	917 bp proximal
Tssr102861	transcription start site region 102861	25 bp upstream
Tssr102862	transcription start site region 102862	900 bp upstream
Tssr102863	transcription start site region 102863	917 bp upstream