rs107643011 SNP Detail

Summary

• ID
  rs107643011
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170977218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG ATGCGCAGCA AGATAAAAAT
  W
  AAGGATAAAG ATAACCAATC CAAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss119995556	PARCsnp_1.11855	PARC_SEQ	INBRED	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107643011					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170977218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	678 bp proximal
Mpz	myelin protein zero	1064 bp upstream
Rr396555	regulatory region 396555	1002 bp upstream
Rr423226	regulatory region 423226	303 bp proximal
Rr423227	regulatory region 423227	932 bp proximal
Rr423228	regulatory region 423228	1075 bp proximal
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	within coordinates
Tssr14985	transcription start site region 14985	943 bp downstream