rs107645617 SNP Detail

Summary

• ID
  rs107645617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25948064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT TGTGAGAACC CAAAGCCAAG
  Y
  CTCACAGAGC TGCTGGTCCT GGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145394939	ENSMUSSNP1038571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325339116	CHEV_17_25866035	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107645617					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25948064 () rs orientation: forward

Symbol	Name	Function Class
Chtf18	CTF18, chromosome transmission fidelity factor 18	1655 bp upstream
Cpgi8774	CpG island 8774	1255 bp distal
Rpusd1	RNA pseudouridylate synthase domain containing 1	within coordinates
Rr339369	regulatory region 339369	263 bp distal
Rr405102	regulatory region 405102	1287 bp downstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143173	transcription start site region 143173	1293 bp downstream
Tssr146846	transcription start site region 146846	1727 bp upstream
Tssr146847	transcription start site region 146847	1664 bp upstream