rs107646361 SNP Detail

Summary

• ID
  rs107646361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24003289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT CAGCTGCTTC CCTCTCTTCC
  R
  GAAAACATGA GTTCGGTTTC CAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327326	CHEV_17_23921282	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107646361					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24003289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8693	CpG island 8693			1456 bp proximal
Flywch2	FLYWCH family member 2			Intron
				Noncoding-Transcript-Variant
Rr523143	regulatory region 523143			969 bp proximal
Rr523144	regulatory region 523144			1756 bp proximal
Tssr146663	transcription start site region 146663			1731 bp downstream
Tssr146664	transcription start site region 146664			1776 bp downstream
Tssr146665	transcription start site region 146665			1882 bp downstream