rs107651259 SNP Detail

Summary

• ID
  rs107651259
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:88947359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAATCCTGT CTCAGAAAAC AAGATGAGGG CACTCTGGAG
  GCTGAGACAG GCAGACCTGT CTGAGTTAAA GACTCCATGG TCTACACAGG GAGCTACAGG
  C
  CAACTAGAGC TACATGGTAA GACCTTGTCT CACACCTCAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC CCCAAAAAGA AAGAAAGAAA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136784548	ENSMUSSNP7159282	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs107651259					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:88947359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22121	CpG island 22121	1331 bp proximal
Gm68594	predicted gene, 68594	within coordinates
Rr684355	regulatory region 684355	909 bp proximal
Rr684356	regulatory region 684356	1410 bp proximal
Rr684357	regulatory region 684357	1518 bp proximal
Rr684358	regulatory region 684358	1683 bp proximal
Tssr86421	transcription start site region 86421	1664 bp upstream
Tssr86422	transcription start site region 86422	1741 bp upstream