rs107654018 SNP Detail

Summary

• ID
  rs107654018
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14915532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTGACA CCTGATAATA
  AATAAGTCAG GGCTTACTTC AAGAAAAGGA AAGATAAATT AAATAGAGAA AGTACTTAGC
  CACTTTCTGT TCTAGGTGGG AGACTTAACT GAAGGACCCT GCCATTGTGT TGGATCCTCT
  TAGATTGGAA CCAAAGTGGA CAGGGAAGAC ACCAGGACAA GGCACAACCC CCCCCCCCCC
  B
  CCCCCGCTGA TCTCCAATCC TTGTGTTTCT GTTGAGGTGA AGGAACCTTT GAACCTACAT
  GGTGGAAGGG GAAAACTCAC CTGTAAAATT GTCCTCTGAT TCACATGCTG TGACACAAGT
  GCACATATAC CCAAACACAT ACACGTACCT CCATACGCAG ATCAGCCAAA TATAATACAA
  TTTTAAAATA AGTATTATTT                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
ss397683184	MGP_WTSI_17_14832277	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
rs107654018					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397683184	MGP_WTSI_17_14832277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14915532 () rs orientation: forward

Symbol	Name	Function Class
Rr522558	regulatory region 522558	1046 bp distal
Rr522559	regulatory region 522559	732 bp distal
Rr522560	regulatory region 522560	1399 bp proximal
Thbs2	thrombospondin 2	1035 bp upstream
Tssr146500	transcription start site region 146500	1171 bp upstream
Tssr146501	transcription start site region 146501	1028 bp upstream