rs107655602 SNP Detail

Summary

• ID
  rs107655602
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56595782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGATTC TCTTTCTCTC
  TCCTTAAAGA GTATGTTGGG AGTTAGGAGG TACAAAGCAA GTATTGCTCT CTCAGAGGAT
  CTGAGTTTGA TTCCCAGCAC CCATAGCACG GGATTCACAA CTACCTGTAA CTCAAGGTCA
  AGGACACGTG ATCTCTACAG GCACCACATC CACACGGGCA TACACACAAC TCAAAATAAG
  W
  TAAGCCAGGT GTGCGCCTTT AATCCCAGCA CTTGGGAGTT GGAGCAGGAG GGTCTCTGTG
  AGTCCCAGGC CAACCTGGTC TACAGAGTGA GACCCAGTTA CAACAAAACA TAAAGCAAAA
  ATAAACAAAT ATAATACATC TTATAAAGAT CTACATTTTA GTTTTGCTTA TGTGCATGCA
  GTGGCCACAG AGTTCAGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398555295	MGP_WTSI_17_56428205	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107655602					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398555295	MGP_WTSI_17_56428205	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56595782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9353	CpG island 9353	1564 bp proximal
Plin3	perilipin 3	within coordinates
Rr405377	regulatory region 405377	1572 bp upstream
Rr529026	regulatory region 529026	296 bp distal
Rr529027	regulatory region 529027	within coordinates
Rr529028	regulatory region 529028	1170 bp proximal
Rr529029	regulatory region 529029	1719 bp proximal
Tssr145294	transcription start site region 145294	794 bp upstream
Tssr148779	transcription start site region 148779	916 bp upstream
Tssr148780	transcription start site region 148780	873 bp upstream
Tssr148781	transcription start site region 148781	828 bp upstream
Tssr148782	transcription start site region 148782	781 bp upstream
Tssr148783	transcription start site region 148783	1283 bp downstream
Tssr148784	transcription start site region 148784	1694 bp downstream
Tssr148785	transcription start site region 148785	1717 bp downstream