rs107656287 SNP Detail

Summary

• ID
  rs107656287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGCAGAG TAAGACTGAT
  CAGACAACTC AAAGAAATAT ATTACATATG CAACATGCTT TTGTAGACTA TAATAATAAT
  AATATTTATG AAAATAATGC CAACCATTTA CTCCATTGCT TGGCTTCTAC TGGTCTACAG
  ACTGTATCGA TTGACATTGG TGTTATGTTT ATAAAAAGAT AAAGAGAAGG GGGGTATGTT
  Y
  TATGGAGGTG TAGTCAGGTA TGGGGGAAGG GGGCTCCTTG GTGGGCCCAT GCTGGGGGCC
  CATCCCTTCC CCCTGAGGGA CCAGCCACAT GATGGTATAG TATAGAATGG AGTTTATTTA
  GGACATAGGG AGGGGAGTTA AGAGGGTAGT AGAGGCAGAG AAAGGCAGGA GGGGGAGGGG
  AGGGGAGGGA GATGAGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135873401	ENSMUSSNP5352969	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320957600	CHEV_3_127564874	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs107656287					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655605 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	1228 bp downstream
Rr584887	regulatory region 584887	266 bp distal
Rr584888	regulatory region 584888	557 bp proximal
Tssr31614	transcription start site region 31614	341 bp downstream