rs107657466 SNP Detail

Summary

• ID
  rs107657466
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164327733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGTGGGTCTC AAAGGGGAGG GAGATGACAA GGATGGTTTC
  CTGGTAGCTT GGCCCCGACA CAGATTTCTA ATGGAAACAC ACACACACAC ACACACACAC
  W
  CACACACACA CCAGTCATGG CTCATCCTCA CGCTGTATTC AGAGCCCAGA CAAGGGCATG
  GGGAGGGAGG CGACAGAGCC TTCATCCAGG GGTTGCTATA C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148225433	ENSMUSSNP6205402	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107657466					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164327733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	within coordinates
Dbndd2	dysbindin domain containing 2	293 bp upstream
Gm10725	predicted gene 10725	within coordinates
Gm20458	predicted gene 20458	within coordinates
Rr569631	regulatory region 569631	within coordinates
Rr569632	regulatory region 569632	1075 bp proximal
Tssr21598	transcription start site region 21598	254 bp upstream
Tssr21599	transcription start site region 21599	706 bp upstream
Tssr21600	transcription start site region 21600	1043 bp upstream