rs107659189 SNP Detail

Summary

• ID
  rs107659189
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCCCAG ACCTTTGGGT
  GGCTTATAGT CTTCTGTAAC TCCAGTTCCA CGGGCATATG ATATCCAATT CTGGCCTCCA
  TGGGCACCTG CACTCATACA CATAGATTAA AAAGAAAAAA AGAAAAAACA AAAAAGCCCT
  CCAAATGTCA TTGTCTCCTC CAGCTTTACC TGATCACACA GATTGGTTGT GTCAGTTGTG
  T
  TTCTAAAGAT TGCAGCATTA TTTTCCATTC ACACCCCTGT TCCCCCAGTA ACCAGTAGAC
  CACAGAGTTC ATTTCTTCTC TTCCTGACCA TAATCTGGCC TTGTGATCTG TTTTAGCAGT
  GACACATGGT TTAATAGACA CTGTGCATCT TACCTAGTTG GCACAGTAAA ATGTCCATCT
  TTCTGTGTTT GGTTTTCTCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135869030	ENSMUSSNP4865831	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107659189					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482961 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	760 bp upstream
Tssr35587	transcription start site region 35587	1436 bp downstream
Tssr35588	transcription start site region 35588	1979 bp downstream