rs107660336 SNP Detail

Summary

• ID
  rs107660336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34200367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCACAAGATG GCGCTGACAT CCTGTGTTCT AAGTGGTAAA
  CAAATAATCT GCGCATGTGC CAAGGGTATT TTATGACTAC TTGTACTCTG CCTTTCCCGT
  R
  AATGTCAGCT CGGCCATGGG CTGCAGCCAA TCAGGGAGTG ATGCGTCCTA GGCGAAATAT
  AACGCTCCTA AAAAAGGGGA GGGGGTTTCC GCCATTCTCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145698946	ENSMUSSNP2291966	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107660336					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34200367 () rs orientation: forward

Symbol	Name	Function Class
AA388235	expressed sequence AA388235	99 bp upstream
Cpgi9020	CpG island 9020	within coordinates
Gm4152	predicted gene 4152	635 bp upstream
Gm53998	predicted gene, 53998	93 bp downstream
Gm66175	predicted gene, 66175	within coordinates
Rr392547	regulatory region 392547	within coordinates
Rr526006	regulatory region 526006	512 bp distal
Rr526007	regulatory region 526007	within coordinates
Rr526008	regulatory region 526008	81 bp distal
Rr526009	regulatory region 526009	84 bp proximal
Rr526010	regulatory region 526010	937 bp proximal
Rr526011	regulatory region 526011	953 bp proximal