rs107660336 SNP Detail

Summary

• ID
  rs107660336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34200367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCACAAGATG GCGCTGACAT CCTGTGTTCT AAGTGGTAAA
  CAAATAATCT GCGCATGTGC CAAGGGTATT TTATGACTAC TTGTACTCTG CCTTTCCCGT
  R
  AATGTCAGCT CGGCCATGGG CTGCAGCCAA TCAGGGAGTG ATGCGTCCTA GGCGAAATAT
  AACGCTCCTA AAAAAGGGGA GGGGGTTTCC GCCATTCTCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145698946	ENSMUSSNP2291966	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107660336					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34200367 () rs orientation: forward

Symbol	Name	Function Class
AA388235	expressed sequence AA388235	101 bp upstream
Cpgi9020	CpG island 9020	within coordinates
Gm4152	predicted gene 4152	635 bp upstream
Gm53998	predicted gene, 53998	93 bp downstream
Rr330866	regulatory region 330866	834 bp proximal
Rr339661	regulatory region 339661	1966 bp distal
Rr339662	regulatory region 339662	within coordinates
Rr392547	regulatory region 392547	within coordinates