rs107662483 SNP Detail

Summary

• ID
  rs107662483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80203711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACCTCCC GGGAGCCGGC
  GGGGCGGCCT GCGGGTCCTA GCGCCGCCCT CTGACTTGCG CGGCCCAGAC ACGCCCAGCC
  ACGCCCATCA GCGCCCTCGC TCCTCCTCCG CCCGGGCCAA CCTGCCGCGG AGCTCCGCAG
  CTCTCAGACT TCTAAGGAAG AGTTGGGGAA CCCCCACTGC GGCCGGCGCC ATCCCGTCCC
  Y
  ACCTTCCCGC TCTCGGGGCC ACACCCCCTT GCCGCAGGGC GGAGAAGGCA TCTCCAGTCC
  CTCCTTTCCC AATTCTCTTC GCATCTCTAA CGTTGACTCT GCACGTGAGG TTACATTCGC
  ATCCTTTCCC TCCTAGCTTT CTTACCCCCA GCCCTCTTCC CTGCGAAGCC AGTGCCTGGC
  TTCTCCTGAT ATCTTGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399169393	MGP_WTSI_17_80295622	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	C	T	T	C	C	C	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107662483					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	C	T	T	C	C	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399169393	MGP_WTSI_17_80295622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80203711 () rs orientation: forward

Symbol	Name	Function Class
Atl2	atlastin GTPase 2	159 bp upstream
Cpgi9524	CpG island 9524	within coordinates
Gm41625	predicted gene, 41625	1156 bp downstream
Rr340218	regulatory region 340218	within coordinates
Rr405462	regulatory region 405462	34 bp downstream
Tssr149462	transcription start site region 149462	316 bp upstream
Tssr149463	transcription start site region 149463	263 bp upstream
Tssr149464	transcription start site region 149464	221 bp upstream