rs107665379 SNP Detail

Summary

• ID
  rs107665379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40152442 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T GATTGGTGTG AGGTAGAATC TCAGGGTTGT TTTGATTTGC
  ATTTCCCAAA TTATTAAGGA TGCTAAACAT TTTTTCGTGT GCTTCTCTGC CATTCGGTAT
  W
  CCTCAGGTGA GAATTCTTTG TTTAGCTCTG AGCCCCATTT TTTAATGGGG TTATTTGATT
  TTCTGGAGTC CACCTTCTTG AGTTCTTTAT ATATGTTGGA T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148628338	ENSMUSSNP6907689	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107665379					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40152442 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	1436 bp proximal
Gm26917	predicted gene, 26917	1446 bp upstream
Tssr148051	transcription start site region 148051	1769 bp downstream
Tssr148052	transcription start site region 148052	1932 bp downstream