rs107669477 SNP Detail

Summary

• ID
  rs107669477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129473802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG ACCATGACTC AAAAACAAAA
  Y
  AAACCAAGGA AGAGGAGGAG GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147443023	ENSMUSSNP5675343	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321314013	CHEV_4_129257253	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs107669477					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129473802 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1460 bp upstream
Rr600283	regulatory region 600283	1155 bp distal
Rr600284	regulatory region 600284	within coordinates
Rr600285	regulatory region 600285	819 bp proximal
Tssr43532	transcription start site region 43532	1492 bp upstream
Tssr43533	transcription start site region 43533	1477 bp upstream
Tssr43534	transcription start site region 43534	1449 bp upstream