rs107670612 SNP Detail

Summary

• ID
  rs107670612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171123531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGAGTTT GAGAGCCAGC CTGGTCTACA GAGTGAGTTC
  CAGAACAGCT AGGGCTACAC AGAGAAGCCC TGTCTCAAAA CAAAAACAAA AACAAAAAAA
  Y
  CCCAAAAAAC AAACAAACAA AAAACCCCTC AAAACCAAAA CAACCCCCTA CCCAAAAAAA
  GAGAAAGAAG GAAAGAAAGA AAGAAAAACA AGACATGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss119997261	PARCsnp_1.12707	PARC_SEQ	INBRED	f	SNP	T	C
ss119999081	PARCsnp_1.01809	PARC_SEQ	INBRED	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107670612					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171123531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	1076 bp distal
Rr28967	regulatory region 28967	331 bp distal
Rr31956	regulatory region 31956	70 bp proximal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	1171 bp upstream
Tssr15032	transcription start site region 15032	1119 bp upstream
Tssr15033	transcription start site region 15033	947 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	956 bp upstream