rs107670899 SNP Detail

Summary

• ID
  rs107670899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39534318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTAATTTTA TTACTTATGT GTATGACTGG TTTGTATATA
  TATATATATA TATATATATA TATATATACA TACATATATA TATATATATA TATATATACA
  Y
  ATATATATCA TGTGTATAAT ACCCATGGAA ACCAGAAGAA GGTATTAGAT CCCCTGGAAA
  TGGAGCTACA GATGGTTGTA AGCCAACATG TGGGTGTTGG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148968966	ENSMUSSNP3446388	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107670899					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39534318 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	1952 bp proximal
Tssr6382	transcription start site region 6382	1880 bp downstream